miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Citrus clementina



ABOUT THIS RECORD

ID: MNEST003122
species: Citrus clementina
miRNA family: MIR1525
source: miRNEST

Taxonomy by NCBI:
Citrus clementina Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGGGTTAATTAAGTTTTTTGG

miRNA*
CAGGAACTTCTTTTTATGTCCC

mismatches: 5
bulges: 1

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pre-miRNA
GGAGTTGGGGTCCAGGAACTTCTTTTTATGTCCCAAAAAGCCGGTGAAAGACGGCTGCAGCAACAGCAGCGACGGAACGACATCGTCTTCATCGACGTGT
TCGAAGAACCGGAAAAAGCTAGTAAAACGGTGATTCCTTGGGCTTAAATTCAGGGATTTCTTGGTGGGAACGGGAATCCTTTCCGTTGCCCATTTGGCCG
TTCCGTGGGGGGGTTAATTAAGTTTTTTGGCCCCATGTT


dot-bracket secondary structure
.....(((((((.((((((((..((..((.((((....(((((........)))))((.((....)).)).((((((((.((((((.(((.((((.....
)))).))((.((......)).)).).))))))..((((((((......))))))))...((.((((((((((((((...)))))))).)))))).)).))
)))))).)))).)).))..)))))))).)))))))....



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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